CLM4.5 dataset for year 1850 at ne120np4 resolution

Owned by Gautam Bisht
Last updated: May 26, 2020 by Tanya Reshel

  NERSC Directory Change Notice  

Due to project's name change at NERSC from 'ACME' to 'E3SM' and NERSC’s file system update, the directory  '/project/projectdirs/acme/' is now '/cfs/cdirs/e3sm'

Machine: Edison  
1. Log on Edison and clone E3SM repository
ssh user-name@edison.nersc.gov
cd $SCRATCH 
git clone git@github.com:E3SM-Project/E3SM.git
cd E3SM
export E3SM_DIR=$PWD

2. Generate (or obtain pre-generated) CLM gridfile in SCRIP format
cd $SCRATCH
mkdir inputdata
cd inputdata
export CESM_INPUTDATA_DIR=$PWD
mkdir -p ${CESM_INPUTDATA_DIR}/lnd/clm2/mappingdata/grids
cd ${CESM_INPUTDATA_DIR}/lnd/clm2/mappingdata/grids
svn export https://svn-ccsm-inputdata.cgd.ucar.edu/trunk/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_ne120np4_nomask_c101123.nc
export GRIDFILE=${CESM_INPUTDATA_DIR}/lnd/clm2/mappingdata/grids/SCRIPgrid_ne120np4_nomask_c101123.nc

3. Preliminaries for mkmapdata
The mkmapdata script calls ESMF to generate mapping files. Some of the input data sets are very large and require a large memory footprint, so we need an ESMF built with MPI (note that the ESMF in the e3sm-unified conda environment will not work for this). One way to do this is to build our own. On cori or nersc, the following should be sufficient:

# Source environment settings used when building/running E3SM
MACHINE=cori-knl

# Set paths needed to build ESMF
export ESMF_DIR=${HOME}/software/esmf
export ESMF_COMM=mpi
export ESMF_COMPILER=intel
export ESMF_INSTALL_PREFIX=${HOME}/software/esmf/${MACHINE}_${ESMF_COMPILER}_${ESMF_COMM}
export ESMF_NETCDF="split"

# Build
cd ${ESMF_DIR}
gmake clean
gmake
gmake install

We then need to load additional modules and set environment variables for mkmapdata:

module load nco
module load ncl
export ESMFBIN_PATH=${ESMF_INSTALL_PREFIX}/bin/binO/Unicos.intel.64.mpi.default
export REGRID_PROC=48
export MPIEXEC="srun -n ${REGRID_PROC} "
export CSMDATA=/project/projectdirs/acme/inputdata

4. Create mapping files

4.1 First determine the mapping files that would be created by mkmapdata.sh by running the mkmapdata.sh script in "debug" and "verbose" mode to
cd ${E3SM_DIR}/models/lnd/clm/tools/shared/mkmapdata
> ./mkmapdata.sh --gridfile ${GRIDFILE} --res ne120np4 --phys clm4_5 --gridtype global --debug --batch -v
./mkmapdata.sh
Script to create mapping files required by mksurfdata_map
query command is ./../../../bld/queryDefaultNamelist.pl -silent -namelist clmexp -phys clm4_5 -justvalue -options sim_year=2000 -csmdata /project/projectdirs/ccsm1/inputdata
Using user specified scrip grid file: /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc
Output grid resolution is ne120np4
./../../../bld/queryDefaultNamelist.pl -silent -namelist clmexp -phys clm4_5 -justvalue -options sim_year=2000 -csmdata /project/projectdirs/ccsm1/inputdata -var scripgriddata -res 0.5x0.5 -options lmask=AVHRR,glc_nec=10 -onlyfiles
./../../../bld/queryDefaultNamelist.pl -silent -namelist clmexp -phys clm4_5 -justvalue -options sim_year=2000 -csmdata /project/projectdirs/ccsm1/inputdata -var scripgriddata -res 0.5x0.5 -options lmask=MODIS,glc_nec=10 -onlyfiles
./../../../bld/queryDefaultNamelist.pl -silent -namelist clmexp -phys clm4_5 -justvalue -options sim_year=2000 -csmdata /project/projectdirs/ccsm1/inputdata -var scripgriddata -res 3x3min -options lmask=LandScan2004,glc_nec=10 -onlyfiles
./../../../bld/queryDefaultNamelist.pl -silent -namelist clmexp -phys clm4_5 -justvalue -options sim_year=2000 -csmdata /project/projectdirs/ccsm1/inputdata -var scripgriddata -res 3x3min -options lmask=MODIS,glc_nec=10 -onlyfiles
./../../../bld/queryDefaultNamelist.pl -silent -namelist clmexp -phys clm4_5 -justvalue -options sim_year=2000 -csmdata /project/projectdirs/ccsm1/inputdata -var scripgriddata -res 3x3min -options lmask=USGS,glc_nec=10 -onlyfiles
./../../../bld/queryDefaultNamelist.pl -silent -namelist clmexp -phys clm4_5 -justvalue -options sim_year=2000 -csmdata /project/projectdirs/ccsm1/inputdata -var scripgriddata -res 5x5min -options lmask=nomask,glc_nec=10 -onlyfiles
./../../../bld/queryDefaultNamelist.pl -silent -namelist clmexp -phys clm4_5 -justvalue -options sim_year=2000 -csmdata /project/projectdirs/ccsm1/inputdata -var scripgriddata -res 5x5min -options lmask=IGBP-GSDP,glc_nec=10 -onlyfiles
./../../../bld/queryDefaultNamelist.pl -silent -namelist clmexp -phys clm4_5 -justvalue -options sim_year=2000 -csmdata /project/projectdirs/ccsm1/inputdata -var scripgriddata -res 5x5min -options lmask=ISRIC-WISE,glc_nec=10 -onlyfiles
./../../../bld/queryDefaultNamelist.pl -silent -namelist clmexp -phys clm4_5 -justvalue -options sim_year=2000 -csmdata /project/projectdirs/ccsm1/inputdata -var scripgriddata -res 10x10min -options lmask=nomask,glc_nec=10 -onlyfiles
./../../../bld/queryDefaultNamelist.pl -silent -namelist clmexp -phys clm4_5 -justvalue -options sim_year=2000 -csmdata /project/projectdirs/ccsm1/inputdata -var scripgriddata -res 10x10min -options lmask=IGBPmergeICESatGIS,glc_nec=10 -onlyfiles
./../../../bld/queryDefaultNamelist.pl -silent -namelist clmexp -phys clm4_5 -justvalue -options sim_year=2000 -csmdata /project/projectdirs/ccsm1/inputdata -var scripgriddata -res 3x3min -options lmask=GLOBE-Gardner,glc_nec=10 -onlyfiles
./../../../bld/queryDefaultNamelist.pl -silent -namelist clmexp -phys clm4_5 -justvalue -options sim_year=2000 -csmdata /project/projectdirs/ccsm1/inputdata -var scripgriddata -res 3x3min -options lmask=GLOBE-Gardner-mergeGIS,glc_nec=10 -onlyfiles
./../../../bld/queryDefaultNamelist.pl -silent -namelist clmexp -phys clm4_5 -justvalue -options sim_year=2000 -csmdata /project/projectdirs/ccsm1/inputdata -var scripgriddata -res 0.9x1.25 -options lmask=GRDC,glc_nec=10 -onlyfiles
./../../../bld/queryDefaultNamelist.pl -silent -namelist clmexp -phys clm4_5 -justvalue -options sim_year=2000 -csmdata /project/projectdirs/ccsm1/inputdata -var scripgriddata -res 360x720cru -options lmask=cruncep,glc_nec=10 -onlyfiles
./../../../bld/queryDefaultNamelist.pl -silent -namelist clmexp -phys clm4_5 -justvalue -options sim_year=2000 -csmdata /project/projectdirs/ccsm1/inputdata -var scripgriddata -res 1km-merge-10min -options lmask=HYDRO1K-merge-nomask,glc_nec=10 -onlyfiles
Running in batch mode using MPI
which: invalid option -- 'n'
which: no 48 in (/project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin:/usr/common/usg/ncl/6.1.1/intel/bin:/usr/common/usg/nco/4.3.8/intel/bin:/opt/cray/netcdf/4.3.2/bin:/usr/common/usg/darshan/2.3.0/bin:/usr/common/usg/altd/2.0/bin:/usr/common/usg/bin:/usr/common/mss/bin:/usr/common/nsg/bin:/opt/moab/8.0.1/bin:/opt/moab/8.0.1/sbin:/opt/torque/5.0.1/sbin:/opt/torque/5.0.1/bin:/opt/cray/mpt/7.1.1/gni/bin:/opt/cray/atp/1.7.5/bin:/opt/cray/rca/1.0.0-2.0502.53711.3.127.ari/bin:/opt/cray/alps/5.2.1-2.0502.9041.11.6.ari/sbin:/opt/cray/alps/5.2.1-2.0502.9041.11.6.ari/bin:/opt/cray/dvs/2.5_0.9.0-1.0502.1873.1.145.ari/bin:/opt/cray/xpmem/0.1-2.0502.55507.3.2.ari/bin:/opt/cray/dmapp/7.0.1-1.0502.9501.5.219.ari/bin:/opt/cray/pmi/5.0.6-1.0000.10439.140.2.ari/bin:/opt/cray/ugni/5.0-1.0502.9685.4.24.ari/bin:/opt/cray/udreg/2.3.2-1.0502.9275.1.12.ari/bin:/opt/intel/composer_xe_2015.1.133/bin/intel64:/opt/cray/craype/2.2.1/bin:/opt/cray/switch/1.0-1.0502.54233.2.96.ari/bin:/opt/cray/eslogin/eswrap/1.1.0-1.020200.1130.0/bin:/usr/syscom/nsg/sbin:/usr/syscom/nsg/bin:/opt/modules/3.2.10.2/bin:/global/homes/g/gbisht/bin:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/usr/lib/mit/bin:/usr/lib/mit/sbin:/usr/lib/qt3/bin:/opt/cray/bin)
Running in batch mode
rm: cannot remove `PET*.Log': No such file or directory
Creating mapping file: map_0.5x0.5_AVHRR_to_ne120np4_nomask_aave_da_c150214.nc
From input grid: /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_0.5x0.5_AVHRR_c110228.nc
For output grid: /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc
 
aprun -n 48 /project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen --ignore_unmapped -s /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_0.5x0.5_AVHRR_c110228.nc -d /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc -m conserve -w map_0.5x0.5_AVHRR_to_ne120np4_nomask_aave_da_c150214.nc --src_type SCRIP --dst_type SCRIP
ncatted -a history,global,a,c,/project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen map_0.5x0.5_AVHRR_to_ne120np4_nomask_aave_da_c150214.nc
ncatted -a hostname,global,a,c,edison07 -h map_0.5x0.5_AVHRR_to_ne120np4_nomask_aave_da_c150214.nc
ncatted -a logname,global,a,c,gbisht -h map_0.5x0.5_AVHRR_to_ne120np4_nomask_aave_da_c150214.nc
rm -f rmdups_map_0.5x0.5_AVHRR_to_ne120np4_nomask_aave_da_c150214.nc
env MAPFILE=map_0.5x0.5_AVHRR_to_ne120np4_nomask_aave_da_c150214.nc NEWMAPFILE=rmdups_map_0.5x0.5_AVHRR_to_ne120np4_nomask_aave_da_c150214.nc ncl ./rmdups.ncl
Creating mapping file: map_0.5x0.5_MODIS_to_ne120np4_nomask_aave_da_c150214.nc
From input grid: /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_0.5x0.5_MODIS_c110228.nc
For output grid: /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc
 
aprun -n 48 /project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen --ignore_unmapped -s /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_0.5x0.5_MODIS_c110228.nc -d /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc -m conserve -w map_0.5x0.5_MODIS_to_ne120np4_nomask_aave_da_c150214.nc --src_type SCRIP --dst_type SCRIP
ncatted -a history,global,a,c,/project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen map_0.5x0.5_MODIS_to_ne120np4_nomask_aave_da_c150214.nc
ncatted -a hostname,global,a,c,edison07 -h map_0.5x0.5_MODIS_to_ne120np4_nomask_aave_da_c150214.nc
ncatted -a logname,global,a,c,gbisht -h map_0.5x0.5_MODIS_to_ne120np4_nomask_aave_da_c150214.nc
rm -f rmdups_map_0.5x0.5_MODIS_to_ne120np4_nomask_aave_da_c150214.nc
env MAPFILE=map_0.5x0.5_MODIS_to_ne120np4_nomask_aave_da_c150214.nc NEWMAPFILE=rmdups_map_0.5x0.5_MODIS_to_ne120np4_nomask_aave_da_c150214.nc ncl ./rmdups.ncl
Creating mapping file: map_3x3min_LandScan2004_to_ne120np4_nomask_aave_da_c150214.nc
From input grid: /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_3minx3min_LandScan2004_c120517.nc
For output grid: /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc
 
aprun -n 48 /project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen --ignore_unmapped -s /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_3minx3min_LandScan2004_c120517.nc -d /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc -m conserve -w map_3x3min_LandScan2004_to_ne120np4_nomask_aave_da_c150214.nc --src_type SCRIP --dst_type SCRIP --64bit_offset
ncatted -a history,global,a,c,/project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen map_3x3min_LandScan2004_to_ne120np4_nomask_aave_da_c150214.nc
ncatted -a hostname,global,a,c,edison07 -h map_3x3min_LandScan2004_to_ne120np4_nomask_aave_da_c150214.nc
ncatted -a logname,global,a,c,gbisht -h map_3x3min_LandScan2004_to_ne120np4_nomask_aave_da_c150214.nc
rm -f rmdups_map_3x3min_LandScan2004_to_ne120np4_nomask_aave_da_c150214.nc
env MAPFILE=map_3x3min_LandScan2004_to_ne120np4_nomask_aave_da_c150214.nc NEWMAPFILE=rmdups_map_3x3min_LandScan2004_to_ne120np4_nomask_aave_da_c150214.nc ncl ./rmdups.ncl
Creating mapping file: map_3x3min_MODIS_to_ne120np4_nomask_aave_da_c150214.nc
From input grid: /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_3minx3min_MODIS_c110915.nc
For output grid: /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc
 
aprun -n 48 /project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen --ignore_unmapped -s /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_3minx3min_MODIS_c110915.nc -d /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc -m conserve -w map_3x3min_MODIS_to_ne120np4_nomask_aave_da_c150214.nc --src_type SCRIP --dst_type SCRIP --64bit_offset
ncatted -a history,global,a,c,/project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen map_3x3min_MODIS_to_ne120np4_nomask_aave_da_c150214.nc
ncatted -a hostname,global,a,c,edison07 -h map_3x3min_MODIS_to_ne120np4_nomask_aave_da_c150214.nc
ncatted -a logname,global,a,c,gbisht -h map_3x3min_MODIS_to_ne120np4_nomask_aave_da_c150214.nc
rm -f rmdups_map_3x3min_MODIS_to_ne120np4_nomask_aave_da_c150214.nc
env MAPFILE=map_3x3min_MODIS_to_ne120np4_nomask_aave_da_c150214.nc NEWMAPFILE=rmdups_map_3x3min_MODIS_to_ne120np4_nomask_aave_da_c150214.nc ncl ./rmdups.ncl
Creating mapping file: map_3x3min_USGS_to_ne120np4_nomask_aave_da_c150214.nc
From input grid: /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_3x3_USGS_c120912.nc
For output grid: /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc
 
aprun -n 48 /project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen --ignore_unmapped -s /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_3x3_USGS_c120912.nc -d /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc -m conserve -w map_3x3min_USGS_to_ne120np4_nomask_aave_da_c150214.nc --src_type SCRIP --dst_type SCRIP --64bit_offset
ncatted -a history,global,a,c,/project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen map_3x3min_USGS_to_ne120np4_nomask_aave_da_c150214.nc
ncatted -a hostname,global,a,c,edison07 -h map_3x3min_USGS_to_ne120np4_nomask_aave_da_c150214.nc
ncatted -a logname,global,a,c,gbisht -h map_3x3min_USGS_to_ne120np4_nomask_aave_da_c150214.nc
rm -f rmdups_map_3x3min_USGS_to_ne120np4_nomask_aave_da_c150214.nc
env MAPFILE=map_3x3min_USGS_to_ne120np4_nomask_aave_da_c150214.nc NEWMAPFILE=rmdups_map_3x3min_USGS_to_ne120np4_nomask_aave_da_c150214.nc ncl ./rmdups.ncl
Creating mapping file: map_5x5min_nomask_to_ne120np4_nomask_aave_da_c150214.nc
From input grid: /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_5x5min_nomask_c110530.nc
For output grid: /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc
 
aprun -n 48 /project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen --ignore_unmapped -s /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_5x5min_nomask_c110530.nc -d /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc -m conserve -w map_5x5min_nomask_to_ne120np4_nomask_aave_da_c150214.nc --src_type SCRIP --dst_type SCRIP
ncatted -a history,global,a,c,/project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen map_5x5min_nomask_to_ne120np4_nomask_aave_da_c150214.nc
ncatted -a hostname,global,a,c,edison07 -h map_5x5min_nomask_to_ne120np4_nomask_aave_da_c150214.nc
ncatted -a logname,global,a,c,gbisht -h map_5x5min_nomask_to_ne120np4_nomask_aave_da_c150214.nc
rm -f rmdups_map_5x5min_nomask_to_ne120np4_nomask_aave_da_c150214.nc
env MAPFILE=map_5x5min_nomask_to_ne120np4_nomask_aave_da_c150214.nc NEWMAPFILE=rmdups_map_5x5min_nomask_to_ne120np4_nomask_aave_da_c150214.nc ncl ./rmdups.ncl
Creating mapping file: map_5x5min_IGBP-GSDP_to_ne120np4_nomask_aave_da_c150214.nc
From input grid: /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_5x5min_IGBP-GSDP_c110228.nc
For output grid: /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc
 
aprun -n 48 /project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen --ignore_unmapped -s /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_5x5min_IGBP-GSDP_c110228.nc -d /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc -m conserve -w map_5x5min_IGBP-GSDP_to_ne120np4_nomask_aave_da_c150214.nc --src_type SCRIP --dst_type SCRIP
ncatted -a history,global,a,c,/project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen map_5x5min_IGBP-GSDP_to_ne120np4_nomask_aave_da_c150214.nc
ncatted -a hostname,global,a,c,edison07 -h map_5x5min_IGBP-GSDP_to_ne120np4_nomask_aave_da_c150214.nc
ncatted -a logname,global,a,c,gbisht -h map_5x5min_IGBP-GSDP_to_ne120np4_nomask_aave_da_c150214.nc
rm -f rmdups_map_5x5min_IGBP-GSDP_to_ne120np4_nomask_aave_da_c150214.nc
env MAPFILE=map_5x5min_IGBP-GSDP_to_ne120np4_nomask_aave_da_c150214.nc NEWMAPFILE=rmdups_map_5x5min_IGBP-GSDP_to_ne120np4_nomask_aave_da_c150214.nc ncl ./rmdups.ncl
Creating mapping file: map_5x5min_ISRIC-WISE_to_ne120np4_nomask_aave_da_c150214.nc
From input grid: /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_5x5min_ISRIC-WISE_c111114.nc
For output grid: /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc
 
aprun -n 48 /project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen --ignore_unmapped -s /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_5x5min_ISRIC-WISE_c111114.nc -d /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc -m conserve -w map_5x5min_ISRIC-WISE_to_ne120np4_nomask_aave_da_c150214.nc --src_type SCRIP --dst_type SCRIP
ncatted -a history,global,a,c,/project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen map_5x5min_ISRIC-WISE_to_ne120np4_nomask_aave_da_c150214.nc
ncatted -a hostname,global,a,c,edison07 -h map_5x5min_ISRIC-WISE_to_ne120np4_nomask_aave_da_c150214.nc
ncatted -a logname,global,a,c,gbisht -h map_5x5min_ISRIC-WISE_to_ne120np4_nomask_aave_da_c150214.nc
rm -f rmdups_map_5x5min_ISRIC-WISE_to_ne120np4_nomask_aave_da_c150214.nc
env MAPFILE=map_5x5min_ISRIC-WISE_to_ne120np4_nomask_aave_da_c150214.nc NEWMAPFILE=rmdups_map_5x5min_ISRIC-WISE_to_ne120np4_nomask_aave_da_c150214.nc ncl ./rmdups.ncl
Creating mapping file: map_10x10min_nomask_to_ne120np4_nomask_aave_da_c150214.nc
From input grid: /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_10x10min_nomask_c110228.nc
For output grid: /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc
 
aprun -n 48 /project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen --ignore_unmapped -s /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_10x10min_nomask_c110228.nc -d /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc -m conserve -w map_10x10min_nomask_to_ne120np4_nomask_aave_da_c150214.nc --src_type SCRIP --dst_type SCRIP
ncatted -a history,global,a,c,/project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen map_10x10min_nomask_to_ne120np4_nomask_aave_da_c150214.nc
ncatted -a hostname,global,a,c,edison07 -h map_10x10min_nomask_to_ne120np4_nomask_aave_da_c150214.nc
ncatted -a logname,global,a,c,gbisht -h map_10x10min_nomask_to_ne120np4_nomask_aave_da_c150214.nc
rm -f rmdups_map_10x10min_nomask_to_ne120np4_nomask_aave_da_c150214.nc
env MAPFILE=map_10x10min_nomask_to_ne120np4_nomask_aave_da_c150214.nc NEWMAPFILE=rmdups_map_10x10min_nomask_to_ne120np4_nomask_aave_da_c150214.nc ncl ./rmdups.ncl
Creating mapping file: map_10x10min_IGBPmergeICESatGIS_to_ne120np4_nomask_aave_da_c150214.nc
From input grid: /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_10x10min_IGBPmergeICESatGIS_c110818.nc
For output grid: /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc
 
aprun -n 48 /project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen --ignore_unmapped -s /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_10x10min_IGBPmergeICESatGIS_c110818.nc -d /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc -m conserve -w map_10x10min_IGBPmergeICESatGIS_to_ne120np4_nomask_aave_da_c150214.nc --src_type SCRIP --dst_type SCRIP
ncatted -a history,global,a,c,/project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen map_10x10min_IGBPmergeICESatGIS_to_ne120np4_nomask_aave_da_c150214.nc
ncatted -a hostname,global,a,c,edison07 -h map_10x10min_IGBPmergeICESatGIS_to_ne120np4_nomask_aave_da_c150214.nc
ncatted -a logname,global,a,c,gbisht -h map_10x10min_IGBPmergeICESatGIS_to_ne120np4_nomask_aave_da_c150214.nc
rm -f rmdups_map_10x10min_IGBPmergeICESatGIS_to_ne120np4_nomask_aave_da_c150214.nc
env MAPFILE=map_10x10min_IGBPmergeICESatGIS_to_ne120np4_nomask_aave_da_c150214.nc NEWMAPFILE=rmdups_map_10x10min_IGBPmergeICESatGIS_to_ne120np4_nomask_aave_da_c150214.nc ncl ./rmdups.ncl
Creating mapping file: map_3x3min_GLOBE-Gardner_to_ne120np4_nomask_aave_da_c150214.nc
From input grid: /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_3minx3min_GLOBE-Gardner_c120922.nc
For output grid: /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc
 
aprun -n 48 /project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen --ignore_unmapped -s /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_3minx3min_GLOBE-Gardner_c120922.nc -d /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc -m conserve -w map_3x3min_GLOBE-Gardner_to_ne120np4_nomask_aave_da_c150214.nc --src_type SCRIP --dst_type SCRIP --64bit_offset
ncatted -a history,global,a,c,/project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen map_3x3min_GLOBE-Gardner_to_ne120np4_nomask_aave_da_c150214.nc
ncatted -a hostname,global,a,c,edison07 -h map_3x3min_GLOBE-Gardner_to_ne120np4_nomask_aave_da_c150214.nc
ncatted -a logname,global,a,c,gbisht -h map_3x3min_GLOBE-Gardner_to_ne120np4_nomask_aave_da_c150214.nc
rm -f rmdups_map_3x3min_GLOBE-Gardner_to_ne120np4_nomask_aave_da_c150214.nc
env MAPFILE=map_3x3min_GLOBE-Gardner_to_ne120np4_nomask_aave_da_c150214.nc NEWMAPFILE=rmdups_map_3x3min_GLOBE-Gardner_to_ne120np4_nomask_aave_da_c150214.nc ncl ./rmdups.ncl
Creating mapping file: map_3x3min_GLOBE-Gardner-mergeGIS_to_ne120np4_nomask_aave_da_c150214.nc
From input grid: /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_3minx3min_GLOBE-Gardner-mergeGIS_c120922.nc
For output grid: /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc
 
aprun -n 48 /project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen --ignore_unmapped -s /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_3minx3min_GLOBE-Gardner-mergeGIS_c120922.nc -d /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc -m conserve -w map_3x3min_GLOBE-Gardner-mergeGIS_to_ne120np4_nomask_aave_da_c150214.nc --src_type SCRIP --dst_type SCRIP --64bit_offset
ncatted -a history,global,a,c,/project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen map_3x3min_GLOBE-Gardner-mergeGIS_to_ne120np4_nomask_aave_da_c150214.nc
ncatted -a hostname,global,a,c,edison07 -h map_3x3min_GLOBE-Gardner-mergeGIS_to_ne120np4_nomask_aave_da_c150214.nc
ncatted -a logname,global,a,c,gbisht -h map_3x3min_GLOBE-Gardner-mergeGIS_to_ne120np4_nomask_aave_da_c150214.nc
rm -f rmdups_map_3x3min_GLOBE-Gardner-mergeGIS_to_ne120np4_nomask_aave_da_c150214.nc
env MAPFILE=map_3x3min_GLOBE-Gardner-mergeGIS_to_ne120np4_nomask_aave_da_c150214.nc NEWMAPFILE=rmdups_map_3x3min_GLOBE-Gardner-mergeGIS_to_ne120np4_nomask_aave_da_c150214.nc ncl ./rmdups.ncl
Creating mapping file: map_0.9x1.25_GRDC_to_ne120np4_nomask_aave_da_c150214.nc
From input grid: /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_0.9x1.25_GRDC_c130307.nc
For output grid: /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc
 
aprun -n 48 /project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen --ignore_unmapped -s /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_0.9x1.25_GRDC_c130307.nc -d /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc -m conserve -w map_0.9x1.25_GRDC_to_ne120np4_nomask_aave_da_c150214.nc --src_type SCRIP --dst_type SCRIP
ncatted -a history,global,a,c,/project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen map_0.9x1.25_GRDC_to_ne120np4_nomask_aave_da_c150214.nc
ncatted -a hostname,global,a,c,edison07 -h map_0.9x1.25_GRDC_to_ne120np4_nomask_aave_da_c150214.nc
ncatted -a logname,global,a,c,gbisht -h map_0.9x1.25_GRDC_to_ne120np4_nomask_aave_da_c150214.nc
rm -f rmdups_map_0.9x1.25_GRDC_to_ne120np4_nomask_aave_da_c150214.nc
env MAPFILE=map_0.9x1.25_GRDC_to_ne120np4_nomask_aave_da_c150214.nc NEWMAPFILE=rmdups_map_0.9x1.25_GRDC_to_ne120np4_nomask_aave_da_c150214.nc ncl ./rmdups.ncl
Creating mapping file: map_360x720cru_cruncep_to_ne120np4_nomask_aave_da_c150214.nc
From input grid: /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_360x720_cruncep_c120830.nc
For output grid: /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc
 
aprun -n 48 /project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen --ignore_unmapped -s /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_360x720_cruncep_c120830.nc -d /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc -m conserve -w map_360x720cru_cruncep_to_ne120np4_nomask_aave_da_c150214.nc --src_type SCRIP --dst_type SCRIP
ncatted -a history,global,a,c,/project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen map_360x720cru_cruncep_to_ne120np4_nomask_aave_da_c150214.nc
ncatted -a hostname,global,a,c,edison07 -h map_360x720cru_cruncep_to_ne120np4_nomask_aave_da_c150214.nc
ncatted -a logname,global,a,c,gbisht -h map_360x720cru_cruncep_to_ne120np4_nomask_aave_da_c150214.nc
rm -f rmdups_map_360x720cru_cruncep_to_ne120np4_nomask_aave_da_c150214.nc
env MAPFILE=map_360x720cru_cruncep_to_ne120np4_nomask_aave_da_c150214.nc NEWMAPFILE=rmdups_map_360x720cru_cruncep_to_ne120np4_nomask_aave_da_c150214.nc ncl ./rmdups.ncl
Creating mapping file: map_1km-merge-10min_HYDRO1K-merge-nomask_to_ne120np4_nomask_aave_da_c150214.nc
From input grid: /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/UGRID_1km-merge-10min_HYDRO1K-merge-nomask_c130402.nc
For output grid: /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc
 
aprun -n 48 /project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen --ignore_unmapped -s /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/UGRID_1km-merge-10min_HYDRO1K-merge-nomask_c130402.nc -d /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc -m conserve -w map_1km-merge-10min_HYDRO1K-merge-nomask_to_ne120np4_nomask_aave_da_c150214.nc --src_type UGRID --src_meshname landmesh --dst_type SCRIP --netcdf4
ncatted -a history,global,a,c,/project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen map_1km-merge-10min_HYDRO1K-merge-nomask_to_ne120np4_nomask_aave_da_c150214.nc
ncatted -a hostname,global,a,c,edison07 -h map_1km-merge-10min_HYDRO1K-merge-nomask_to_ne120np4_nomask_aave_da_c150214.nc
ncatted -a logname,global,a,c,gbisht -h map_1km-merge-10min_HYDRO1K-merge-nomask_to_ne120np4_nomask_aave_da_c150214.nc
rm -f rmdups_map_1km-merge-10min_HYDRO1K-merge-nomask_to_ne120np4_nomask_aave_da_c150214.nc
env MAPFILE=map_1km-merge-10min_HYDRO1K-merge-nomask_to_ne120np4_nomask_aave_da_c150214.nc NEWMAPFILE=rmdups_map_1km-merge-10min_HYDRO1K-merge-nomask_to_ne120np4_nomask_aave_da_c150214.nc ncl ./rmdups.ncl
Successffully created needed mapping files for ne120np4


4.2 Following are the 15 mapping files needed to create surface dataset for CLM4_5 physics @ ne120np4 resolution:
 map_3x3min_MODIS_to_ne120np4_nomask_aave_da_c150214.nc
 map_3x3min_USGS_to_ne120np4_nomask_aave_da_c150214.nc
 map_5x5min_nomask_to_ne120np4_nomask_aave_da_c150214.nc
 map_5x5min_IGBP-GSDP_to_ne120np4_nomask_aave_da_c150214.nc
 map_5x5min_ISRIC-WISE_to_ne120np4_nomask_aave_da_c150214.nc
 map_10x10min_nomask_to_ne120np4_nomask_aave_da_c150214.nc
 map_10x10min_IGBPmergeICESatGIS_to_ne120np4_nomask_aave_da_c150214.nc
 map_3x3min_GLOBE-Gardner_to_ne120np4_nomask_aave_da_c150214.nc
 map_3x3min_GLOBE-Gardner-mergeGIS_to_ne120np4_nomask_aave_da_c150214.nc
 map_0.9x1.25_GRDC_to_ne120np4_nomask_aave_da_c150214.nc
 map_360x720cru_cruncep_to_ne120np4_nomask_aave_da_c150214.nc
 map_1km-merge-10min_HYDRO1K-merge-nomask_to_ne120np4_nomask_aave_da_c150214.nc

4.2.1 Only the generation of map_1km-merge-10min_HYDRO1K-merge-nomask_to_ne120np4_nomask_aave_da_c150214.nc, requires modifying the default commands outputted by mkmapdata.sh
 - Due to large memory requirement of the source dataset (UGRID_1km-merge-10min_HYDRO1K-merge-nomask_c130402.nc), one needs to limit the number of tasks NUMA per node by "aprun -S 1"
 - Additionally, one need to change the command line option to ESMF_RegridWeightGen from '--netcdf4'to '--64bit_offset'

4.3 Generate the mapping files via interactive or batch job. Below are example of pbs scripts to create the mapping files.

4.3.1
> cat 0.5x0.5_AVHRR.pbs
#PBS -A acme
#PBS -q regular
#PBS -l mppwidth=48
#PBS -l walltime=01:00:00
#PBS -N 0.5x0.5_AVHRR
#PBS -j oe 
#PBS -m abe
#PBS -M gbisht@lbl.gov
 module load nco/4.3.8
module load ncl/6.1.1
 cd /scratch2/scratchdirs/gbisht/Projects/ACME/repos/ACME/models/lnd/clm/tools/shared/mkmapdata
CDATE="c"`date +%y%m%d`
aprun -n 48 /project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen --ignore_unmapped -s /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_0.5x0.5_AVHRR_c110228.nc -d /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc -m conserve -w map_0.5x0.5_AVHRR_to_ne120np4_nomask_aave_da_${CDATE}.nc --src_type SCRIP --dst_type SCRIP
ncatted -a history,global,a,c,/project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen map_0.5x0.5_AVHRR_to_ne120np4_nomask_aave_da_${CDATE}.nc
ncatted -a hostname,global,a,c,${HOST} -h map_0.5x0.5_AVHRR_to_ne120np4_nomask_aave_da_${CDATE}.nc
ncatted -a logname,global,a,c,gbisht -h map_0.5x0.5_AVHRR_to_ne120np4_nomask_aave_da_${CDATE}.nc
rm -f rmdups_map_0.5x0.5_AVHRR_to_ne120np4_nomask_aave_da_${CDATE}.nc
env MAPFILE=map_0.5x0.5_AVHRR_to_ne120np4_nomask_aave_da_${CDATE}.nc NEWMAPFILE=rmdups_map_0.5x0.5_AVHRR_to_ne120np4_nomask_aave_da_${CDATE}.nc ncl ./rmdups.ncl

4.3.2
> cat 0.5x0.5_MODIS.pbs
#PBS -A acme
#PBS -q regular
#PBS -l mppwidth=48
#PBS -l walltime=01:00:00
#PBS -N 0.5x0.5_MODIS
#PBS -j oe 
#PBS -m abe
#PBS -M gbisht@lbl.gov
 module load nco/4.3.8
module load ncl/6.1.1
 cd /scratch2/scratchdirs/gbisht/Projects/ACME/repos/ACME/models/lnd/clm/tools/shared/mkmapdata
CDATE="c"`date +%y%m%d`
aprun -n 48 /project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen --ignore_unmapped -s /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_0.5x0.5_MODIS_c110228.nc -d /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc -m conserve -w map_0.5x0.5_MODIS_to_ne120np4_nomask_aave_da_${CDATE}.nc --src_type SCRIP --dst_type SCRIP
ncatted -a history,global,a,c,/project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen map_0.5x0.5_MODIS_to_ne120np4_nomask_aave_da_${CDATE}.nc
ncatted -a hostname,global,a,c,${HOST} -h map_0.5x0.5_MODIS_to_ne120np4_nomask_aave_da_${CDATE}.nc
ncatted -a logname,global,a,c,gbisht -h map_0.5x0.5_MODIS_to_ne120np4_nomask_aave_da_${CDATE}.nc
rm -f rmdups_map_0.5x0.5_MODIS_to_ne120np4_nomask_aave_da_${CDATE}.nc
env MAPFILE=map_0.5x0.5_MODIS_to_ne120np4_nomask_aave_da_${CDATE}.nc NEWMAPFILE=rmdups_map_0.5x0.5_MODIS_to_ne120np4_nomask_aave_da_${CDATE}.nc ncl ./rmdups.ncl

4.3.3
>cat 3x3min_LandScan2004.pbs 
#PBS -A acme
#PBS -q regular
#PBS -l mppwidth=48
#PBS -l walltime=01:00:00
#PBS -N LandScan2004
#PBS -j oe 
#PBS -m abe
#PBS -M gbisht@lbl.gov
 module load nco/4.3.8
module load ncl/6.1.1
 cd /scratch2/scratchdirs/gbisht/Projects/ACME/repos/ACME/models/lnd/clm/tools/shared/mkmapdata
CDATE="c"`date +%y%m%d`
 aprun -n 48 /project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen --ignore_unmapped -s /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_3minx3min_LandScan2004_c120517.nc -d /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc -m conserve -w map_3x3min_LandScan2004_to_ne120np4_nomask_aave_da_${CDATE}.nc --src_type SCRIP --dst_type SCRIP --64bit_offset
ncatted -a history,global,a,c,/project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen map_3x3min_LandScan2004_to_ne120np4_nomask_aave_da_${CDATE}.nc
ncatted -a hostname,global,a,c,${HOST} -h map_3x3min_LandScan2004_to_ne120np4_nomask_aave_da_${CDATE}.nc
ncatted -a logname,global,a,c,gbisht -h map_3x3min_LandScan2004_to_ne120np4_nomask_aave_da_${CDATE}.nc
rm -f rmdups_map_3x3min_LandScan2004_to_ne120np4_nomask_aave_da_${CDATE}.nc
env MAPFILE=map_3x3min_LandScan2004_to_ne120np4_nomask_aave_da_${CDATE}.nc NEWMAPFILE=rmdups_map_3x3min_LandScan2004_to_ne120np4_nomask_aave_da_${CDATE}.nc ncl ./rmdups.ncl
4.3.4 
>cat 3x3min_MODIS.pbs
#PBS -A acme
#PBS -q regular
#PBS -l mppwidth=48
#PBS -l walltime=02:00:00
#PBS -N 3x3min_MODIS
#PBS -j oe 
#PBS -m abe
#PBS -M gbisht@lbl.gov
module load nco/4.3.8
module load ncl/6.1.1
cd /scratch2/scratchdirs/gbisht/Projects/ACME/repos/ACME/models/lnd/clm/tools/shared/mkmapdata
CDATE="c"`date +%y%m%d`
aprun -n 48 /project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen --ignore_unmapped -s /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_3minx3min_MODIS_c110915.nc -d /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc -m conserve -w map_3x3min_MODIS_to_ne120np4_nomask_aave_da_${CDATE}.nc --src_type SCRIP --dst_type SCRIP --64bit_offset
ncatted -a history,global,a,c,/project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen map_3x3min_MODIS_to_ne120np4_nomask_aave_da_${CDATE}.nc
ncatted -a hostname,global,a,c,${HOST} -h map_3x3min_MODIS_to_ne120np4_nomask_aave_da_${CDATE}.nc
ncatted -a logname,global,a,c,gbisht -h map_3x3min_MODIS_to_ne120np4_nomask_aave_da_${CDATE}.nc
rm -f rmdups_map_3x3min_MODIS_to_ne120np4_nomask_aave_da_${CDATE}.nc
env MAPFILE=map_3x3min_MODIS_to_ne120np4_nomask_aave_da_${CDATE}.nc NEWMAPFILE=rmdups_map_3x3min_MODIS_to_ne120np4_nomask_aave_da_${CDATE}.nc ncl ./rmdups.ncl

4.3.5
>cat 3x3min_USGS.pbs
#PBS -A acme
#PBS -q regular
#PBS -l mppwidth=48
#PBS -l walltime=01:00:00
#PBS -N 3x3min_USGS
#PBS -j oe 
#PBS -m abe
#PBS -M gbisht@lbl.gov
module load nco/4.3.8
module load ncl/6.1.1
cd /scratch2/scratchdirs/gbisht/Projects/ACME/repos/ACME/models/lnd/clm/tools/shared/mkmapdata
CDATE="c"`date +%y%m%d`
aprun -n 48 /project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen --ignore_unmapped -s /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_3x3_USGS_c120912.nc -d /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc -m conserve -w map_3x3min_USGS_to_ne120np4_nomask_aave_da_${CDATE}.nc --src_type SCRIP --dst_type SCRIP --64bit_offset
ncatted -a history,global,a,c,/project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen map_3x3min_USGS_to_ne120np4_nomask_aave_da_${CDATE}.nc
ncatted -a hostname,global,a,c,${HOST} -h map_3x3min_USGS_to_ne120np4_nomask_aave_da_${CDATE}.nc
ncatted -a logname,global,a,c,gbisht -h map_3x3min_USGS_to_ne120np4_nomask_aave_da_${CDATE}.nc
rm -f rmdups_map_3x3min_USGS_to_ne120np4_nomask_aave_da_${CDATE}.nc
env MAPFILE=map_3x3min_USGS_to_ne120np4_nomask_aave_da_${CDATE}.nc NEWMAPFILE=rmdups_map_3x3min_USGS_to_ne120np4_nomask_aave_da_${CDATE}.nc ncl ./rmdups.ncl

4.3.6
>cat 5x5min_nomask.pbs
#PBS -A acme
#PBS -q regular
#PBS -l mppwidth=48
#PBS -l walltime=03:00:00
#PBS -N 5x5min_nomask
#PBS -j oe 
#PBS -m abe
#PBS -M gbisht@lbl.gov
module load nco/4.3.8
module load ncl/6.1.1
cd /scratch2/scratchdirs/gbisht/Projects/ACME/repos/ACME/models/lnd/clm/tools/shared/mkmapdata
CDATE="c"`date +%y%m%d`
aprun -n 48 /project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen --ignore_unmapped -s /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_5x5min_nomask_c110530.nc -d /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc -m conserve -w map_5x5min_nomask_to_ne120np4_nomask_aave_da_${CDATE}.nc --src_type SCRIP --dst_type SCRIP
ncatted -a history,global,a,c,/project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen map_5x5min_nomask_to_ne120np4_nomask_aave_da_${CDATE}.nc
ncatted -a hostname,global,a,c,${HOST} -h map_5x5min_nomask_to_ne120np4_nomask_aave_da_${CDATE}.nc
ncatted -a logname,global,a,c,gbisht -h map_5x5min_nomask_to_ne120np4_nomask_aave_da_${CDATE}.nc
rm -f rmdups_map_5x5min_nomask_to_ne120np4_nomask_aave_da_${CDATE}.nc
env MAPFILE=map_5x5min_nomask_to_ne120np4_nomask_aave_da_${CDATE}.nc NEWMAPFILE=rmdups_map_5x5min_nomask_to_ne120np4_nomask_aave_da_${CDATE}.nc ncl ./rmdups.ncl

4.3.7
>cat 5x5min_IGBP-GSDP.pbs
#PBS -A acme
#PBS -q regular
#PBS -l mppwidth=48
#PBS -l walltime=01:00:00
#PBS -N 5x5min_IGBP-GSDP
#PBS -j oe 
#PBS -m abe
#PBS -M gbisht@lbl.gov
module load nco/4.3.8
module load ncl/6.1.1
cd /scratch2/scratchdirs/gbisht/Projects/ACME/repos/ACME/models/lnd/clm/tools/shared/mkmapdata
CDATE="c"`date +%y%m%d`
aprun -n 48 /project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen --ignore_unmapped -s /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_5x5min_IGBP-GSDP_c110228.nc -d /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc -m conserve -w map_5x5min_IGBP-GSDP_to_ne120np4_nomask_aave_da_${CDATE}.nc --src_type SCRIP --dst_type SCRIP
ncatted -a history,global,a,c,/project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen map_5x5min_IGBP-GSDP_to_ne120np4_nomask_aave_da_${CDATE}.nc
ncatted -a hostname,global,a,c,${HOST} -h map_5x5min_IGBP-GSDP_to_ne120np4_nomask_aave_da_${CDATE}.nc
ncatted -a logname,global,a,c,gbisht -h map_5x5min_IGBP-GSDP_to_ne120np4_nomask_aave_da_${CDATE}.nc
rm -f rmdups_map_5x5min_IGBP-GSDP_to_ne120np4_nomask_aave_da_${CDATE}.nc
env MAPFILE=map_5x5min_IGBP-GSDP_to_ne120np4_nomask_aave_da_${CDATE}.nc NEWMAPFILE=rmdups_map_5x5min_IGBP-GSDP_to_ne120np4_nomask_aave_da_${CDATE}.nc ncl ./rmdups.ncl
4.3.8
>cat 5x5min_ISRIC-WISE.pbs
#PBS -A acme
#PBS -q regular
#PBS -l mppwidth=48
#PBS -l walltime=01:00:00
#PBS -N 5x5min_ISRIC-WISE
#PBS -j oe 
#PBS -m abe
#PBS -M gbisht@lbl.gov
module load nco/4.3.8
module load ncl/6.1.1
cd /scratch2/scratchdirs/gbisht/Projects/ACME/repos/ACME/models/lnd/clm/tools/shared/mkmapdata
CDATE="c"`date +%y%m%d`
aprun -n 48 /project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen --ignore_unmapped -s /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_5x5min_ISRIC-WISE_c111114.nc -d /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc -m conserve -w map_5x5min_ISRIC-WISE_to_ne120np4_nomask_aave_da_${CDATE}.nc --src_type SCRIP --dst_type SCRIP
ncatted -a history,global,a,c,/project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen map_5x5min_ISRIC-WISE_to_ne120np4_nomask_aave_da_${CDATE}.nc
ncatted -a hostname,global,a,c,${HOST} -h map_5x5min_ISRIC-WISE_to_ne120np4_nomask_aave_da_${CDATE}.nc
ncatted -a logname,global,a,c,gbisht -h map_5x5min_ISRIC-WISE_to_ne120np4_nomask_aave_da_${CDATE}.nc
rm -f rmdups_map_5x5min_ISRIC-WISE_to_ne120np4_nomask_aave_da_${CDATE}.nc
env MAPFILE=map_5x5min_ISRIC-WISE_to_ne120np4_nomask_aave_da_${CDATE}.nc NEWMAPFILE=rmdups_map_5x5min_ISRIC-WISE_to_ne120np4_nomask_aave_da_${CDATE}.nc ncl ./rmdups.ncl

4.3.9
> cat 10x10min_nomask.pbs
#PBS -A acme
#PBS -q regular
#PBS -l mppwidth=48
#PBS -l walltime=01:00:00
#PBS -N 10x10min_nomask
#PBS -j oe 
#PBS -m abe
#PBS -M gbisht@lbl.gov
module load nco/4.3.8
module load ncl/6.1.1
cd /scratch2/scratchdirs/gbisht/Projects/ACME/repos/ACME/models/lnd/clm/tools/shared/mkmapdata
CDATE="c"`date +%y%m%d`
aprun -n 48 /project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen --ignore_unmapped -s /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_10x10min_nomask_c110228.nc -d /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc -m conserve -w map_10x10min_nomask_to_ne120np4_nomask_aave_da_${CDATE}.nc --src_type SCRIP --dst_type SCRIP
ncatted -a history,global,a,c,/project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen map_10x10min_nomask_to_ne120np4_nomask_aave_da_${CDATE}.nc
ncatted -a hostname,global,a,c,${HOST} -h map_10x10min_nomask_to_ne120np4_nomask_aave_da_${CDATE}.nc
ncatted -a logname,global,a,c,gbisht -h map_10x10min_nomask_to_ne120np4_nomask_aave_da_${CDATE}.nc
rm -f rmdups_map_10x10min_nomask_to_ne120np4_nomask_aave_da_${CDATE}.nc
env MAPFILE=map_10x10min_nomask_to_ne120np4_nomask_aave_da_${CDATE}.nc NEWMAPFILE=rmdups_map_10x10min_nomask_to_ne120np4_nomask_aave_da_${CDATE}.nc ncl ./rmdups.ncl

4.3.10
> cat 10x10min_IGBPmergeICESatGIS.pbs
#PBS -A acme
#PBS -q regular
#PBS -l mppwidth=48
#PBS -l walltime=01:00:00
#PBS -N 10x10min_IGBPmergeICESatGIS
#PBS -j oe 
#PBS -m abe
#PBS -M gbisht@lbl.gov
module load nco/4.3.8
module load ncl/6.1.1
cd /scratch2/scratchdirs/gbisht/Projects/ACME/repos/ACME/models/lnd/clm/tools/shared/mkmapdata
CDATE="c"`date +%y%m%d`
aprun -n 48 /project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen --ignore_unmapped -s /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_10x10min_IGBPmergeICESatGIS_c110818.nc -d /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc -m conserve -w map_10x10min_IGBPmergeICESatGIS_to_ne120np4_nomask_aave_da_${CDATE}.nc --src_type SCRIP --dst_type SCRIP
ncatted -a history,global,a,c,/project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen map_10x10min_IGBPmergeICESatGIS_to_ne120np4_nomask_aave_da_${CDATE}.nc
ncatted -a hostname,global,a,c,${HOST} -h map_10x10min_IGBPmergeICESatGIS_to_ne120np4_nomask_aave_da_${CDATE}.nc
ncatted -a logname,global,a,c,gbisht -h map_10x10min_IGBPmergeICESatGIS_to_ne120np4_nomask_aave_da_${CDATE}.nc
rm -f rmdups_map_10x10min_IGBPmergeICESatGIS_to_ne120np4_nomask_aave_da_${CDATE}.nc
env MAPFILE=map_10x10min_IGBPmergeICESatGIS_to_ne120np4_nomask_aave_da_${CDATE}.nc NEWMAPFILE=rmdups_map_10x10min_IGBPmergeICESatGIS_to_ne120np4_nomask_aave_da_${CDATE}.nc ncl ./rmdups.ncl

4.3.11
> cat 3x3min_GLOBE-Gardner.pbs
#PBS -A acme
#PBS -q regular
#PBS -l mppwidth=48
#PBS -l walltime=03:00:00
#PBS -N 3x3min_GLOBE-Gardner
#PBS -j oe 
#PBS -m abe
#PBS -M gbisht@lbl.gov
module load nco/4.3.8
module load ncl/6.1.1
cd /scratch2/scratchdirs/gbisht/Projects/ACME/repos/ACME/models/lnd/clm/tools/shared/mkmapdata
CDATE="c"`date +%y%m%d`
aprun -n 48 /project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen --ignore_unmapped -s /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_3minx3min_GLOBE-Gardner_c120922.nc -d /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc -m conserve -w map_3x3min_GLOBE-Gardner_to_ne120np4_nomask_aave_da_${CDATE}.nc --src_type SCRIP --dst_type SCRIP --64bit_offset
ncatted -a history,global,a,c,/project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen map_3x3min_GLOBE-Gardner_to_ne120np4_nomask_aave_da_${CDATE}.nc
ncatted -a hostname,global,a,c,${HOST} -h map_3x3min_GLOBE-Gardner_to_ne120np4_nomask_aave_da_${CDATE}.nc
ncatted -a logname,global,a,c,gbisht -h map_3x3min_GLOBE-Gardner_to_ne120np4_nomask_aave_da_${CDATE}.nc
rm -f rmdups_map_3x3min_GLOBE-Gardner_to_ne120np4_nomask_aave_da_${CDATE}.nc
env MAPFILE=map_3x3min_GLOBE-Gardner_to_ne120np4_nomask_aave_da_${CDATE}.nc NEWMAPFILE=rmdups_map_3x3min_GLOBE-Gardner_to_ne120np4_nomask_aave_da_${CDATE}.nc ncl ./rmdups.ncl

4.3.12
> cat 3x3min_GLOBE-Gardner-mergeGIS.pbs
#PBS -A acme
#PBS -q regular
#PBS -l mppwidth=48
#PBS -l walltime=03:00:00
#PBS -N 3x3min_GLOBE-Gardner-mergeGIS
#PBS -j oe 
#PBS -m abe
#PBS -M gbisht@lbl.gov
module load nco/4.3.8
module load ncl/6.1.1
cd /scratch2/scratchdirs/gbisht/Projects/ACME/repos/ACME/models/lnd/clm/tools/shared/mkmapdata
CDATE="c"`date +%y%m%d`
aprun -n 48 /project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen --ignore_unmapped -s /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_3minx3min_GLOBE-Gardner-mergeGIS_c120922.nc -d /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc -m conserve -w map_3x3min_GLOBE-Gardner-mergeGIS_to_ne120np4_nomask_aave_da_${CDATE}.nc --src_type SCRIP --dst_type SCRIP --64bit_offset
ncatted -a history,global,a,c,/project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen map_3x3min_GLOBE-Gardner-mergeGIS_to_ne120np4_nomask_aave_da_${CDATE}.nc
ncatted -a hostname,global,a,c,${HOST} -h map_3x3min_GLOBE-Gardner-mergeGIS_to_ne120np4_nomask_aave_da_${CDATE}.nc
ncatted -a logname,global,a,c,gbisht -h map_3x3min_GLOBE-Gardner-mergeGIS_to_ne120np4_nomask_aave_da_${CDATE}.nc
rm -f rmdups_map_3x3min_GLOBE-Gardner-mergeGIS_to_ne120np4_nomask_aave_da_${CDATE}.nc
env MAPFILE=map_3x3min_GLOBE-Gardner-mergeGIS_to_ne120np4_nomask_aave_da_${CDATE}.nc NEWMAPFILE=rmdups_map_3x3min_GLOBE-Gardner-mergeGIS_to_ne120np4_nomask_aave_da_${CDATE}.nc ncl ./rmdups.ncl

4.3.13
> cat 0.9x1.25_GRDC.pbs
#PBS -A acme
#PBS -q regular
#PBS -l mppwidth=48
#PBS -l walltime=01:00:00
#PBS -N 0.9x1.25_GRDC
#PBS -j oe 
#PBS -m abe
#PBS -M gbisht@lbl.gov
module load nco/4.3.8
module load ncl/6.1.1
cd /scratch2/scratchdirs/gbisht/Projects/ACME/repos/ACME/models/lnd/clm/tools/shared/mkmapdata
CDATE="c"`date +%y%m%d`
aprun -n 48 /project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen --ignore_unmapped -s /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_0.9x1.25_GRDC_c130307.nc -d /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc -m conserve -w map_0.9x1.25_GRDC_to_ne120np4_nomask_aave_da_${CDATE}.nc --src_type SCRIP --dst_type SCRIP
ncatted -a history,global,a,c,/project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen map_0.9x1.25_GRDC_to_ne120np4_nomask_aave_da_${CDATE}.nc
ncatted -a hostname,global,a,c,${HOST} -h map_0.9x1.25_GRDC_to_ne120np4_nomask_aave_da_${CDATE}.nc
ncatted -a logname,global,a,c,gbisht -h map_0.9x1.25_GRDC_to_ne120np4_nomask_aave_da_${CDATE}.nc
rm -f rmdups_map_0.9x1.25_GRDC_to_ne120np4_nomask_aave_da_${CDATE}.nc
env MAPFILE=map_0.9x1.25_GRDC_to_ne120np4_nomask_aave_da_${CDATE}.nc NEWMAPFILE=rmdups_map_0.9x1.25_GRDC_to_ne120np4_nomask_aave_da_${CDATE}.nc ncl ./rmdups.ncl

4.3.14
> cat 360x720cru_cruncep.pbs
#PBS -A acme
#PBS -q regular
#PBS -l mppwidth=48
#PBS -l walltime=01:00:00
#PBS -N 360x720cru_cruncep
#PBS -j oe 
#PBS -m abe
#PBS -M gbisht@lbl.gov
module load nco/4.3.8
module load ncl/6.1.1
cd /scratch2/scratchdirs/gbisht/Projects/ACME/repos/ACME/models/lnd/clm/tools/shared/mkmapdata
CDATE="c"`date +%y%m%d`
aprun -n 48 /project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen --ignore_unmapped -s /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_360x720_cruncep_c120830.nc -d /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc -m conserve -w map_360x720cru_cruncep_to_ne120np4_nomask_aave_da_${CDATE}.nc --src_type SCRIP --dst_type SCRIP
ncatted -a history,global,a,c,/project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen map_360x720cru_cruncep_to_ne120np4_nomask_aave_da_${CDATE}.nc
ncatted -a hostname,global,a,c,${HOST} -h map_360x720cru_cruncep_to_ne120np4_nomask_aave_da_${CDATE}.nc
ncatted -a logname,global,a,c,gbisht -h map_360x720cru_cruncep_to_ne120np4_nomask_aave_da_${CDATE}.nc
rm -f rmdups_map_360x720cru_cruncep_to_ne120np4_nomask_aave_da_${CDATE}.nc
env MAPFILE=map_360x720cru_cruncep_to_ne120np4_nomask_aave_da_${CDATE}.nc NEWMAPFILE=rmdups_map_360x720cru_cruncep_to_ne120np4_nomask_aave_da_${CDATE}.nc ncl ./rmdups.ncl

4.3.15
> cat 1km-merge-10min_HYDRO1K-merge-nomask.pbs
#PBS -A acme
#PBS -q regular
#PBS -l mppwidth=960
#PBS -l walltime=04:00:00
#PBS -N 1km-merge-10min_HYDRO1K-merge-nomask
#PBS -j oe 
#PBS -m abe
#PBS -M gbisht@lbl.gov
module load nco/4.3.8
module load ncl/6.1.1
cd /scratch2/scratchdirs/gbisht/Projects/ACME/repos/ACME/models/lnd/clm/tools/shared/mkmapdata
CDATE="c"`date +%y%m%d`
aprun -n 48 -S 1 /project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen --ignore_unmapped -s /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/UGRID_1km-merge-10min_HYDRO1K-merge-nomask_c130402.nc -d /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc -m conserve -w map_1km-merge-10min_HYDRO1K-merge-nomask_to_ne120np4_nomask_aave_da_${CDATE}.nc --src_type UGRID --src_meshname landmesh --dst_type SCRIP --64bit_offset
ncatted -a history,global,a,c,/project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen map_1km-merge-10min_HYDRO1K-merge-nomask_to_ne120np4_nomask_aave_da_${CDATE}.nc
ncatted -a hostname,global,a,c,${HOST} -h map_1km-merge-10min_HYDRO1K-merge-nomask_to_ne120np4_nomask_aave_da_${CDATE}.nc
ncatted -a logname,global,a,c,gbisht -h map_1km-merge-10min_HYDRO1K-merge-nomask_to_ne120np4_nomask_aave_da_${CDATE}.nc
rm -f rmdups_map_1km-merge-10min_HYDRO1K-merge-nomask_to_ne120np4_nomask_aave_da_${CDATE}.nc
env MAPFILE=map_1km-merge-10min_HYDRO1K-merge-nomask_to_ne120np4_nomask_aave_da_${CDATE}.nc NEWMAPFILE=rmdups_map_1km-merge-10min_HYDRO1K-merge-nomask_to_ne120np4_nomask_aave_da_${CDATE}.nc ncl ./rmdups.ncl


4.4 Move the mapping netcdf files to inputdata directory
mkdir -p ${CESM_INPUTDATA_DIR}/lnd/clm2/maps/ne120np4
mv ${ACME_DIR}/models/lnd/clm/tools/shared/mkmapdata/map*.nc ${CESM_INPUTDATA_DIR}/lnd/clm2/maps/ne120np4
5. Create surface dataset

5.1 Add the mapping in components/clm/bld/namelist_files/namelist_defaults_clm4_5.xml
<map frm_hgrid="0.5x0.5"    frm_lmask="AVHRR"  to_hgrid="1x1_brazil"   to_lmask="nomask" 	<map frm_hgrid="0.5x0.5"    frm_lmask="AVHRR"  to_hgrid="1x1_brazil"   to_lmask="nomask" 
>lnd/clm2/mappingdata/maps/1x1_brazil/map_0.5x0.5_AVHRR_to_1x1_brazil_nomask_aave_da_c120717.nc</map>	>lnd/clm2/mappingdata/maps/1x1_brazil/map_0.5x0.5_AVHRR_to_1x1_brazil_nomask_aave_da_c120717.nc</map>
<map frm_hgrid="0.5x0.5"    frm_lmask="MODIS"  to_hgrid="1x1_brazil"   to_lmask="nomask" 	<map frm_hgrid="0.5x0.5"    frm_lmask="MODIS"  to_hgrid="1x1_brazil"   to_lmask="nomask" 
>lnd/clm2/mappingdata/maps/1x1_brazil/map_0.5x0.5_MODIS_to_1x1_brazil_nomask_aave_da_c120717.nc</map>	>lnd/clm2/mappingdata/maps/1x1_brazil/map_0.5x0.5_MODIS_to_1x1_brazil_nomask_aave_da_c120717.nc</map>
<map frm_hgrid="0.5x0.5"    frm_lmask="nomask"  to_hgrid="1x1_brazil"   to_lmask="nomask" 	<map frm_hgrid="0.5x0.5"    frm_lmask="nomask"  to_hgrid="1x1_brazil"   to_lmask="nomask" 
>lnd/clm2/mappingdata/maps/1x1_brazil/map_0.5x0.5_nomask_to_1x1_brazil_nomask_aave_da_c120717.nc</map>	>lnd/clm2/mappingdata/maps/1x1_brazil/map_0.5x0.5_nomask_to_1x1_brazil_nomask_aave_da_c120717.nc</map>
<map frm_hgrid="10x10min"    frm_lmask="nomask"  to_hgrid="1x1_brazil"   to_lmask="nomask" 	<map frm_hgrid="10x10min"    frm_lmask="nomask"  to_hgrid="1x1_brazil"   to_lmask="nomask" 
>lnd/clm2/mappingdata/maps/1x1_brazil/map_10x10min_nomask_to_1x1_brazil_nomask_aave_da_c120717.nc</map>	>lnd/clm2/mappingdata/maps/1x1_brazil/map_10x10min_nomask_to_1x1_brazil_nomask_aave_da_c120717.nc</map>
<map frm_hgrid="3x3min"    frm_lmask="MODIS"  to_hgrid="1x1_brazil"   to_lmask="nomask" 	<map frm_hgrid="3x3min"    frm_lmask="MODIS"  to_hgrid="1x1_brazil"   to_lmask="nomask" 
>lnd/clm2/mappingdata/maps/1x1_brazil/map_3x3min_MODIS_to_1x1_brazil_nomask_aave_da_c120717.nc</map>	>lnd/clm2/mappingdata/maps/1x1_brazil/map_3x3min_MODIS_to_1x1_brazil_nomask_aave_da_c120717.nc</map>
<map frm_hgrid="3x3min"    frm_lmask="USGS"   to_hgrid="1x1_brazil"   to_lmask="nomask" 	<map frm_hgrid="3x3min"    frm_lmask="USGS"   to_hgrid="1x1_brazil"   to_lmask="nomask" 
>lnd/clm2/mappingdata/maps/1x1_brazil/map_3x3min_USGS_to_1x1_brazil_nomask_aave_da_c120927.nc</map>	>lnd/clm2/mappingdata/maps/1x1_brazil/map_3x3min_USGS_to_1x1_brazil_nomask_aave_da_c120927.nc</map>
<map frm_hgrid="3x3min"    frm_lmask="LandScan2004" to_hgrid="1x1_brazil"   to_lmask="nomask" 	<map frm_hgrid="3x3min"    frm_lmask="LandScan2004" to_hgrid="1x1_brazil"   to_lmask="nomask" 
>lnd/clm2/mappingdata/maps/1x1_brazil/map_3x3min_LandScan2004_to_1x1_brazil_nomask_aave_da_c121114.nc</map>	>lnd/clm2/mappingdata/maps/1x1_brazil/map_3x3min_LandScan2004_to_1x1_brazil_nomask_aave_da_c121114.nc</map>
<map frm_hgrid="5x5min"    frm_lmask="IGBP-GSDP"  to_hgrid="1x1_brazil"   to_lmask="nomask" 	<map frm_hgrid="5x5min"    frm_lmask="IGBP-GSDP"  to_hgrid="1x1_brazil"   to_lmask="nomask" 
>lnd/clm2/mappingdata/maps/1x1_brazil/map_5x5min_IGBP-GSDP_to_1x1_brazil_nomask_aave_da_c120717.nc</map>	>lnd/clm2/mappingdata/maps/1x1_brazil/map_5x5min_IGBP-GSDP_to_1x1_brazil_nomask_aave_da_c120717.nc</map>
<map frm_hgrid="5x5min"    frm_lmask="ISRIC-WISE"  to_hgrid="1x1_brazil"   to_lmask="nomask" 	<map frm_hgrid="5x5min"    frm_lmask="ISRIC-WISE"  to_hgrid="1x1_brazil"   to_lmask="nomask" 
>lnd/clm2/mappingdata/maps/1x1_brazil/map_5x5min_ISRIC-WISE_to_1x1_brazil_nomask_aave_da_c120717.nc</map>	>lnd/clm2/mappingdata/maps/1x1_brazil/map_5x5min_ISRIC-WISE_to_1x1_brazil_nomask_aave_da_c120717.nc</map>
<map frm_hgrid="5x5min"    frm_lmask="nomask"  to_hgrid="1x1_brazil"   to_lmask="nomask" 	<map frm_hgrid="5x5min"    frm_lmask="nomask"  to_hgrid="1x1_brazil"   to_lmask="nomask" 
>lnd/clm2/mappingdata/maps/1x1_brazil/map_5x5min_nomask_to_1x1_brazil_nomask_aave_da_c120717.nc</map>	>lnd/clm2/mappingdata/maps/1x1_brazil/map_5x5min_nomask_to_1x1_brazil_nomask_aave_da_c120717.nc</map>
<map frm_hgrid="3x3min"   frm_lmask="GLOBE-Gardner" to_hgrid="1x1_brazil" to_lmask="nomask"	<map frm_hgrid="3x3min"   frm_lmask="GLOBE-Gardner" to_hgrid="1x1_brazil" to_lmask="nomask"
>lnd/clm2/mappingdata/maps/1x1_brazil/map_3x3min_GLOBE-Gardner_to_1x1_brazil_nomask_aave_da_c120927.nc</map>	>lnd/clm2/mappingdata/maps/1x1_brazil/map_3x3min_GLOBE-Gardner_to_1x1_brazil_nomask_aave_da_c120927.nc</map>
<map frm_hgrid="3x3min"   frm_lmask="GLOBE-Gardner-mergeGIS" to_hgrid="1x1_brazil" to_lmask="nomask"	<map frm_hgrid="3x3min"   frm_lmask="GLOBE-Gardner-mergeGIS" to_hgrid="1x1_brazil" to_lmask="nomask"
>lnd/clm2/mappingdata/maps/1x1_brazil/map_3x3min_GLOBE-Gardner-mergeGIS_to_1x1_brazil_nomask_aave_da_c120927.nc</map>	>lnd/clm2/mappingdata/maps/1x1_brazil/map_3x3min_GLOBE-Gardner-mergeGIS_to_1x1_brazil_nomask_aave_da_c120927.nc</map>
<map frm_hgrid="0.9x1.25"    frm_lmask="GRDC"  to_hgrid="1x1_brazil"   to_lmask="nomask" 	<map frm_hgrid="0.9x1.25"    frm_lmask="GRDC"  to_hgrid="1x1_brazil"   to_lmask="nomask" 
>lnd/clm2/mappingdata/maps/1x1_brazil/map_0.9x1.25_GRDC_to_1x1_brazil_nomask_aave_da_c130309.nc</map>	>lnd/clm2/mappingdata/maps/1x1_brazil/map_0.9x1.25_GRDC_to_1x1_brazil_nomask_aave_da_c130309.nc</map>
<map frm_hgrid="360x720cru"    frm_lmask="cruncep"  to_hgrid="1x1_brazil"   to_lmask="nomask" 	<map frm_hgrid="360x720cru"    frm_lmask="cruncep"  to_hgrid="1x1_brazil"   to_lmask="nomask" 
>lnd/clm2/mappingdata/maps/1x1_brazil/map_360x720_cruncep_to_1x1_brazil_nomask_aave_da_c130326.nc</map>	>lnd/clm2/mappingdata/maps/1x1_brazil/map_360x720_cruncep_to_1x1_brazil_nomask_aave_da_c130326.nc</map>
<map frm_hgrid="1km-merge-10min"    frm_lmask="HYDRO1K-merge-nomask"  to_hgrid="1x1_brazil"   to_lmask="nomask" 	<map frm_hgrid="1km-merge-10min"    frm_lmask="HYDRO1K-merge-nomask"  to_hgrid="1x1_brazil"   to_lmask="nomask" 
>lnd/clm2/mappingdata/maps/1x1_brazil/map_1km-merge-10min_HYDRO1K-merge-nomask_to_1x1_brazil_nomask_aave_da_c130403.nc</map>	


5.2 Compile surface dataset source code (Updated on 15-Nov-2016 based on Ritvik Sahajpal's comment)
module load cray-netcdf/4.4.0
module load cray-hdf5/1.8.16
export LIB_NETCDF=/opt/cray/netcdf/4.4.0/intel/150/lib
export INC_NETCDF=/opt/cray/netcdf/4.4.0/intel/150/include
export USER_FC=ifort
export USER_CC=icc
export USER_LDFLAGS="-L/opt/cray/netcdf/4.4.0/intel/150/lib -lnetcdf -lnetcdff -lnetcdf_intel"
export USER_LDFLAGS=$USER_LDFLAGS" -L//opt/cray/hdf5/1.8.16/intel/150/lib -lhdf5 -lhdf5_fortran -lhdf5_cpp -lhdf5_fortran_intel -lhdf5_hl_intel -lhdf5hl_fortran_intel"
cd ${ACME_DIR}/models/lnd/clm/tools/clm4_5/mksurfdata_map/src
gmake


5.3 Run the mksurfdata.pl script in "debug" mode to generate the namelist
cd ${ACME_DIR}/models/lnd/clm/tools/clm4_5/mksurfdata_map
./mksurfdata.pl -res usrspec -usr_gname ne120np4 -usr_gdate 150214 -y 1850 -d \
-dinlc /project/projectdirs/ccsm1/inputdata \
-usr_mapdir {CSMDATA}/lnd/clm2/mappingdata/maps/ne120np4

5.4 Create the surface dataset via interactive or batch job
> cat surfdata_ne120np4_simyr1850.pbs
#PBS -A acme
#PBS -q regular
#PBS -l mppwidth=960
#PBS -l walltime=04:00:00
#PBS -N surfdata_ne120np4_simyr1850
#PBS -j oe 
#PBS -m abe
#PBS -M gbisht@lbl.gov
module load nco/4.3.8
module load ncl/6.1.1
cd /scratch2/scratchdirs/gbisht/Projects/ACME/repos/ACME/models/lnd/clm/tools/clm4_5/mksurfdata_map
aprun -n 1 ./mksurfdata_map < namelist