ACME v1.0_alpha6

4842dc64643

Major fixes: (OCN) vertical mixing fixes, new high res mapping files,

Other fixes: (ATM) compute tms bug fix, fix namelist for RK MP, high-res config on mira (OCN) fix badly formatted write, (SCRIPTS) error code in jenkins, turn off hyperthreading on cori, remove PEA test, fix HOMME tests on NERSC.

New: (ATM) add FC5AV1C-03, F1850C5AV1C-03, add zmconv_alfa to namelist (OCN) add Redi mixing in GM (disabled), transect transport AM, more info on timesteps, output attributes on history (SCRIPTS) high-res builds on cori (ALL) PIO2 support

Redefine WCYCLE case to use AV1C-03 atmosphere compset.  High res WCYCLE can build (but not run) on cori