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19 Dec 2018

Citation Registration

Renata McCoy has the access and is a point of contact for changes to the citation registration, and E3SM CMIP6 documentation for the CMIP6

citation DKRZ software : https://cera-www.dkrz.de/ords/f?p=127:LOGIN_DESKTOP::::::

DRS Name:   CMIP6.CMIP.E3SM-Project.E3SM-1-0
             Title: E3SM-Project E3SM1.0 model output prepared for CMIP6 CMIP2018-07-11

List of Persons

name: E3SM v1.0 CMIP6 Authors List . List Description: E3SM project authors list for the citation of E3SM v1.0 CMIP6 data (value: exec list)

name: E3SM v1.0 CMIP6 Contact List. List Description: E3SM project contact people list for the citation of E3SM v1.0 CMIP6 data . ( value: Dave and Renata)

List of Institutes Name: E3SM v1.0 Institutions . List Description: E3SM Project Participating Institutions (value: LLNL, ANL, BNL, LANL, LBNL, ORNL, PNNL, SNL)

Link	DRS Name	URL of Citation Landing Page	Citation Landing Page

...

Table of Contents

19 Jan 2021

Currently registered CMIP6 datasets:

SOURCE_ID:
- E3SM-1-0 (1073) https://doi.org/10.22033/ESGF/CMIP6.2294
  - EXPERIMENT_ID:
    - 1pctCO2 (108) https://doi.org/10.22033/ESGF/CMIP6.4490
    - abrupt-4xCO2 (108) https://doi.org/10.22033/ESGF/CMIP6.4491
    - amip (210) https://doi.org/10.22033/ESGF/CMIP6.4492
    - historical (540) https://doi.org/10.22033/ESGF/CMIP6.4497
    - piControl (107). https://doi.org/10.22033/ESGF/CMIP6.4499
- E3SM-1-1 (668) https://doi.org/10.22033/ESGF/CMIP6.11441 , https://doi.org/10.22033/ESGF/CMIP6.11442
  - EXPERIMENT_ID:
    - hist-bgc (114). https://doi.org/10.22033/ESGF/CMIP6.11483
    - historical (113) https://doi.org/10.22033/ESGF/CMIP6.11485
    - piControl (209) https://doi.org/10.22033/ESGF/CMIP6.11489
    - ssp585 (116)
    - ssp585-bgc (116). https://doi.org/10.22033/ESGF/CMIP6.11495
- E3SM-1-1-ECA (568) https://doi.org/10.22033/ESGF/CMIP6.11443 , https://doi.org/10.22033/ESGF/CMIP6.11444
  - EXPERIMENT_ID:
    - hist-bgc (114) https://doi.org/10.22033/ESGF/CMIP6.11484
    - historical (139) https://doi.org/10.22033/ESGF/CMIP6.11486
    - piControl (199). https://doi.org/10.22033/ESGF/CMIP6.11490
    - ssp585-bgc (116). https://doi.org/10.22033/ESGF/CMIP6.11496

19 Dec 2018

Citation Registration

Renata McCoy has the access and is a point of contact for changes to the citation registration, and E3SM CMIP6 documentation for the CMIP6

citation DKRZ software : https://cera-www.dkrz.de/ords/f?p=127:LOGIN_DESKTOP::::::

DRS Name: CMIP6.CMIP.E3SM-Project.E3SM-1-0

...

Title: E3SM-Project

...

CMIP6 information on Registration

https://www.earthsystemcog.org/projects/wip/CMIP6DataRequest

https://github.com/WCRP-CMIP/CMIP6_CVs/blob/master/.github/Model_registration_template.md

E3SM Registration issues in WCRP-CMIP github

Institution_id – CMIP6 table

https://rawgit.com/WCRP-CMIP/CMIP6_CVs/master/src/CMIP6_institution_id.html

...

institution_id registration of E3SM-Project . (as new issue in github https://github.com/WCRP-CMIP/CMIP6_CVs/issues/new)

...

institution_id registration of E3SM-Project

institution_id = E3SM-Project
institution = LLNL (Lawrence Livermore National Laboratory, Livermore, CA 94550, USA); ANL (Argonne National Laboratory, Argonne, IL 60439, USA); BNL (Brookhaven National Laboratory, Upton, NY 11973, USA); LANL (Los Alamos National Laboratory, Los Alamos, NM 87545); LBNL (Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA); ORNL (Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA); PNNL (Pacific Northwest National Laboratory, Richland, WA 99352, USA); SNL(Sandia National Laboratories, Albuquerque, NM 87185, USA). Mailing address: LLNL Climate Program, c/o David C. Bader, Principal Investigator, L-103, 7000 East Avenue, Livermore, CA 94550, USA

Source_id – CMIP6 table

https://rawgit.com/WCRP-CMIP/CMIP6_CVs/master/src/CMIP6_source_id.html

...

E3SM1.0 model output prepared for CMIP6 CMIP

2018-07-11

List of Persons

name: E3SM v1.0 CMIP6 Authors List . List Description: E3SM project authors list for the citation of E3SM v1.0 CMIP6 data (value: exec list)

name: E3SM v1.0 CMIP6 Contact List. List Description: E3SM project contact people list for the citation of E3SM v1.0 CMIP6 data . ( value: Dave and Renata)

List of Institutes Name: E3SM v1.0 Institutions . List Description: E3SM Project Participating Institutions (value: LLNL, ANL, BNL, LANL, LBNL, ORNL, PNNL, SNL)

Link	DRS Name	URL of Citation Landing Page	Citation Landing Page


Image Added	CMIP6.CMIP.E3SM-Project.E3SM-1-0	http://cera-www.dkrz.de/WDCC/meta/CMIP6/CMIP6.CMIP.E3SM-Project.E3SM-1-0	View

Currently citation looks like that:

Citation: Bader, David C.; Leung, Ruby; Taylor, Mark; McCoy, Renata B.(2018).E3SM-Project E3SM1.0 model output prepared for CMIP6 CMIP.Earth System Grid Federation.http://cera-www.dkrz.de/WDCC/meta/CMIP6/CMIP6.CMIP.E3SM-Project.E3SM-1-0

To change authors list one needs to change the List of persons, it does not seem to be easy to change the list, we probably need to create a new one. But before creating the list, one needs to add all the people. Go to the 'person' tab from the main citation link, add everyone you need, then create the list, then 'edit connections' and connect the new list with the role 'author', delete the pervious connection or you would get multiple names.

...

CMIP6 information on Registration

https://www.earthsystemcog.org/projects/wip/CMIP6DataRequest

https://github.com/WCRP-CMIP/CMIP6_CVs/blob/

...

master/

...

source_id registration of E3SM-1-0

label = E3SM 1.0
label_extended = E3SM 1.0 (Energy Exascale Earth System Model)
source_id = E3SM-1-0
institution_id = E3SM-Project
release_year = 2018
activity_participation = [CMIP]

aerosol:
description = MAM4 with resuspension, marine organics, and secondary organics (same grid as atmos )
nominal_resolution = 100 km
atmos:
description =EAM (v1.0, cubed sphere spectral-element grid; 5400 elements with p=3; 1 deg average grid spacing; 90 x 90 x 6 longitude/latitude/cubeface; 72 levels; top level 0.1 hPa)
nominal_resolution = 100 km
atmosChem:
description = Troposphere specified oxidants for aerosols. Stratosphere linearized interactive ozone (LINOZ v2) (same grid as atmos)
nominal_resolution = 100 km
land:
description = ELM (v1.0, cubed sphere spectral-element grid; 5400 elements with p=3; 1 deg average grid spacing; 90 x 90 x 6 longitude/latitude/cubeface; satellite phenology mode), MOSART (v1.0, 0.5 degree latitude/longitude grid)
nominal_resolution = 100 km
landIce:
description = none
nominal_resolution = none
ocean:
description = MPAS-Ocean (v6.0, oEC60to30 unstructured SVTs mesh with 235160 cells and 714274 edges, variable resolution 60 km to 30 km; 60 levels; top grid cell 0-10 m)
nominal_resolution = 50 km
ocnBgchem:
description = none
nominal_resolution = none
seaIce:
description = MPAS-Seaice (v6.0, same grid as ocean)

nominal_resolution = 50 km

E3SM_input.json

...

.github/Model_registration_template.md

E3SM Registration issues in WCRP-CMIP github

Institution_id – CMIP6 table

https://rawgit.com/WCRP-CMIP/CMIP6_CVs/master/src/CMIP6_institution_id.html

Info

institution_id registration of E3SM-Project . (as new issue in github https://github.com/WCRP-CMIP/CMIP6_CVs/issues/new)

Expand

institution_id registration of E3SM-Project

Source_id – CMIP6 table

https://rawgit.com/WCRP-CMIP/CMIP6_CVs/master/src/CMIP6_source_id.html

Info
source_id registration of E3SM-1-0 . (as new issue in github https://github.com/WCRP-CMIP/CMIP6_CVs/issues/new) . E3SM-1-0 Registration to CMIP6 (source_id) E3SM-1-1-BGC Registration to CMIP6 (source_id) E3SM-1-1-BGC-ECA Registration to CMIP6 (source_id)

Info

source_id registration of E3SM-1-0 . (as new issue in github https://github.com/WCRP-CMIP/CMIP6_CVs/issues/new) .

CMOR per experiment user metadata (https://github.com/PCMDI/cmor/blob/master/Test/common_user_input.json)

Info

e3sm_picontrol_metadata.json

}

references": "Golaz, J.-C., P. M. Caldwell, L. P. Van Roekel and co-authors, 2019: The DOE E3SM coupled model version 1: Overview and evaluation at standard resolution. JAMES, submitted; http://e3sm.org",

"grid": "gs1x1",

"grid_label": "gr",

"nominal_resolution": "100 km",

"institution_id": "E3SM-Project",

"branch_time_in_parent": "0.0D0",

"branch_time_in_child": "0.0D0",

"parent_experiment_id": "piControl-spinup",

"parent_activity_id": "CMIP",

"parent_mip_era": "CMIP6",

"parent_source_id": "E3SM-1-0",

"parent_time_units": "days since 0001-01-01",

"parent_variant_label": "r1i1p1f1",

"branch_method": "Spin-up documentation",

"run_variant": "",

"source_id": "E3SM-1-0",

"source": "E3SM 1.0 (2018)",

"_history_template": "%s ;rewrote data to be consistent with <activity_id> for variable <variable_id> found in table <table_id>.",

"output_path_template": "<mip_era><activity_id><institution_id><source_id><experiment_id><_member_id><table><variable_id><grid_label><version>",

"output_file_template": "<variable_id><table><source_id><experiment_id><_member_id><grid_label>",

"license": "CMIP6 model data produced by E3SM is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License (https://creativecommons.org/licenses/). Consult https://pcmdi.llnl.gov/CMIP6/TermsOfUse for terms of use governing CMIP6 output, including citation requirements and proper acknowledgment. Further information about this data, including some limitations, can be found via the further_info_url (recorded as a global attribute in this file). The data producers and data providers make no warranty, either express or implied, including, but not limited to, warranties of merchantability and fitness for a particular purpose. All liabilities arising from the supply of the information (including any liability arising in negligence) are excluded to the fullest extent permitted by law."

}

Expand

E3SMe3sm_picontrol_inputmetadata.json

{

"_control_vocabulary_file": "CMIP6_CV.json",

"_AXIS_ENTRY_FILE": "CMIP6_coordinate.json",

"_FORMULA_VAR_FILE": "CMIP6_formula_terms

.json

.json",

"_cmip6_option": "CMIP6",

"tracking_prefix": "hdl:21.14100",

"activity_id": "CMIP",

_cmip6_option

outpath": "CMIP6",

tracking

experiment_

prefix

id": "

hdl:21.14100

piControl",

activity

sub_experiment_id": "

CMIP

none",

#output

sub_experiment": "

Root directory where files are written

none",

outpath

source_type": "

CMIP6

AOGCM AER",

#experiment

mip_

era": "

CMIP6 valid experiment_ids are found in

CMIP6

_CV.json

experiment_id

calendar": "

piControl

noleap",

sub

realization_

experiment_id

index": "

none

1",

sub

initialization_

experiment

index": "

none

1",

source

physics_

type

index": "

AOGCM AER

1",

mip

forcing_

era

index": "

CMIP6

1",

calendar

contact ": "

noleap

Dave Bader (bader2@llnl.gov)",

realization_index

history": "

Output from 20180129.DECKv1b_piControl.ne30_oEC.edison",

initialization_index

comment": "

physics_index": "1",

"forcing_index": "1",

"#contact ": "Not required",

"contact ": "Dave Bader (bader2@llnl.gov)",

"#history": "not required, supplemented by CMOR",

"history": "Output from 20180129.DECKv1b_piControl.ne30_oEC.edison",

"#comment": "Not required",

"comment": "",

"#references": "Not required",

"references": "Model described by Golaz, J-C., et al. 2018. The DOE E3SM coupled model v1: overview and evaluation at standard resolution. JAMES, in prep; Leung, L.R., D. Bader, M. Taylor, and R. McCoy,: An overview of the Energy Exascale Earth System Model (E3SM). JAMES, in prep.'; http://e3sm.org",

"grid": "gs1x1",

"grid_label": "gr",                            # change for ocean to "gn" 

"nominal_resolution": "100 km", # change for ocean

"institution_id": "E3SM-Project",

"parent_experiment_id": "piControl-spinup",

"parent_activity_id": "CMIP6",

"parent_mip_era": "CMIP6",

"parent_source_id": "E3SM-1-0",

"parent_time_units": "days since 0001-01-01",     # should be taken from netcdf file

"parent_variant_label": "none",

"branch_method": "Spin-up documentation",

"branch_time_in_child": "0.0",

"branch_time_in_parent": "0.0",

"#run_variant": "Description of run variant (Recommended).",

"run_variant": "",

"#source_id": "Model Source",

"source_id": "E3SM-1-0",

"#source": "source title, first part is source_id",

"source": "E3SM 1.0 (2018)",

"_history_template": "%s ;rewrote data to be consistent with <activity_id> for variable <variable_id> found in table <table_id>.",

"#output_path_template": "Template for output path directory using tables keys or global attributes",

"output_path_template": "<mip_era><activity_id><institution_id><source_id><experiment_id><_member_id><table><variable_id><grid_label><version>",

"output_file_template": "<variable_id><table><source_id><experiment_id><_member_id><grid_label>",

"license": "E3SM uses a BSD 3-clause (https://opensource.org/licenses/BSD-3-Clause) license. See the code’s LICENSE (https://github.com/E3SM-Project/E3SM/blob/master/LICENSE) file. "

Additional metadata added to the published data files

Info
e3sm_source_code_doi : 10.11578/E3SM/dc.20180418.36 e3sm_paper_reference : https://doi.org/10.1029/2018MS001603 e3sm_source_code_reference : https://github.com/E3SM-Project/E3SM/releases/tag/v1.0.0 doe_acknowledgement : 'This research was supported as part of the Energy Exascale Earth System Model (E3SM) project, funded by the U.S. Department of Energy, Office of Science, Office of Biological and Environmental Research.' computational_acknowledgement : 'The data were produced using resources of the National Energy Research Scientific Computing Center, a DOE Office of Science User Facility supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231. ncclimo_generation_command : "ncclimo --var=${var} -7 --dfl_lvl=1 --no_cll_msr --no_frm_trm --no_stg_grd --yr_srt=1 --yr_end=500 --ypf=25 --map=map_ne30np4_to_cmip6_180x360_aave.20181001.nc" ncclimo_version : 4.8.1-alpha04

Info

e3sm_source_code_doi : 10.11578/E3SM/dc.20180418.36
e3sm_paper_reference : https://doi.org/10.1029/2018MS001603
e3sm_source_code_reference : https://github.com/E3SM-Project/E3SM/releases/tag/v1.0.0
doe_acknowledgement : 'This research was supported as part of the Energy Exascale Earth System Model (E3SM) project, funded by the U.S. Department of Energy, Office of Science, Office of Biological and Environmental Research.'
computational_acknowledgement : 'The data were produced using resources of the National Energy Research Scientific Computing Center, a DOE Office of Science User Facility supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
ncclimo_generation_command : "ncclimo --var=${var} -7 --dfl_lvl=1 --no_cll_msr --no_frm_trm --no_stg_grd --yr_srt=1 --yr_end=500 --ypf=25 --map=map_ne30np4_to_cmip6_180x360_aave.20181001.nc"
ncclimo_version : 4.8.1-alpha04