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Warning15 Apr 2020 NERSC Directory Change Notice
Due to project's name change at NERSC from 'ACME' to 'E3SM' and NERSC’s file system update , the directory ' /project/projectdirs/acme/ ' is now ' /cfs/cdirs/e3sm '
Machine: Edison 1. Log on edison Edison and clone E3SM repository ...
5. Create surface dataset Compile Add surface the dataset mapping source code (Updated on 15-Nov-2016 based on Ritvik Sahajpal's comment) in components/clm/bld/namelist_files/namelist_defaults_clm4_5.xml ...
<map frm_hgrid="0.5x0.5" frm_lmask="AVHRR" to_hgrid="1x1_brazil" to_lmask="nomask" <map frm_hgrid="0.5x0.5" frm_lmask="AVHRR" to_hgrid="1x1_brazil" to_lmask="nomask"
>lnd/clm2/mappingdata/maps/1x1_brazil/map_0.5x0.5_AVHRR_to_1x1_brazil_nomask_aave_da_c120717.nc</map> >lnd/clm2/mappingdata/maps/1x1_brazil/map_0.5x0.5_AVHRR_to_1x1_brazil_nomask_aave_da_c120717.nc</map>
<map frm_hgrid="0.5x0.5" frm_lmask="MODIS" to_hgrid="1x1_brazil" to_lmask="nomask" <map frm_hgrid="0.5x0.5" frm_lmask="MODIS" to_hgrid="1x1_brazil" to_lmask="nomask"
>lnd/clm2/mappingdata/maps/1x1_brazil/map_0.5x0.5_MODIS_to_1x1_brazil_nomask_aave_da_c120717.nc</map> >lnd/clm2/mappingdata/maps/1x1_brazil/map_0.5x0.5_MODIS_to_1x1_brazil_nomask_aave_da_c120717.nc</map>
<map frm_hgrid="0.5x0.5" frm_lmask="nomask" to_hgrid="1x1_brazil" to_lmask="nomask" <map frm_hgrid="0.5x0.5" frm_lmask="nomask" to_hgrid="1x1_brazil" to_lmask="nomask"
>lnd/clm2/mappingdata/maps/1x1_brazil/map_0.5x0.5_nomask_to_1x1_brazil_nomask_aave_da_c120717.nc</map> >lnd/clm2/mappingdata/maps/1x1_brazil/map_0.5x0.5_nomask_to_1x1_brazil_nomask_aave_da_c120717.nc</map>
<map frm_hgrid="10x10min" frm_lmask="nomask" to_hgrid="1x1_brazil" to_lmask="nomask" <map frm_hgrid="10x10min" frm_lmask="nomask" to_hgrid="1x1_brazil" to_lmask="nomask"
>lnd/clm2/mappingdata/maps/1x1_brazil/map_10x10min_nomask_to_1x1_brazil_nomask_aave_da_c120717.nc</map> >lnd/clm2/mappingdata/maps/1x1_brazil/map_10x10min_nomask_to_1x1_brazil_nomask_aave_da_c120717.nc</map>
<map frm_hgrid="3x3min" frm_lmask="MODIS" to_hgrid="1x1_brazil" to_lmask="nomask" <map frm_hgrid="3x3min" frm_lmask="MODIS" to_hgrid="1x1_brazil" to_lmask="nomask"
>lnd/clm2/mappingdata/maps/1x1_brazil/map_3x3min_MODIS_to_1x1_brazil_nomask_aave_da_c120717.nc</map> >lnd/clm2/mappingdata/maps/1x1_brazil/map_3x3min_MODIS_to_1x1_brazil_nomask_aave_da_c120717.nc</map>
<map frm_hgrid="3x3min" frm_lmask="USGS" to_hgrid="1x1_brazil" to_lmask="nomask" <map frm_hgrid="3x3min" frm_lmask="USGS" to_hgrid="1x1_brazil" to_lmask="nomask"
>lnd/clm2/mappingdata/maps/1x1_brazil/map_3x3min_USGS_to_1x1_brazil_nomask_aave_da_c120927.nc</map> >lnd/clm2/mappingdata/maps/1x1_brazil/map_3x3min_USGS_to_1x1_brazil_nomask_aave_da_c120927.nc</map>
<map frm_hgrid="3x3min" frm_lmask="LandScan2004" to_hgrid="1x1_brazil" to_lmask="nomask" <map frm_hgrid="3x3min" frm_lmask="LandScan2004" to_hgrid="1x1_brazil" to_lmask="nomask"
>lnd/clm2/mappingdata/maps/1x1_brazil/map_3x3min_LandScan2004_to_1x1_brazil_nomask_aave_da_c121114.nc</map> >lnd/clm2/mappingdata/maps/1x1_brazil/map_3x3min_LandScan2004_to_1x1_brazil_nomask_aave_da_c121114.nc</map>
<map frm_hgrid="5x5min" frm_lmask="IGBP-GSDP" to_hgrid="1x1_brazil" to_lmask="nomask" <map frm_hgrid="5x5min" frm_lmask="IGBP-GSDP" to_hgrid="1x1_brazil" to_lmask="nomask"
>lnd/clm2/mappingdata/maps/1x1_brazil/map_5x5min_IGBP-GSDP_to_1x1_brazil_nomask_aave_da_c120717.nc</map> >lnd/clm2/mappingdata/maps/1x1_brazil/map_5x5min_IGBP-GSDP_to_1x1_brazil_nomask_aave_da_c120717.nc</map>
<map frm_hgrid="5x5min" frm_lmask="ISRIC-WISE" to_hgrid="1x1_brazil" to_lmask="nomask" <map frm_hgrid="5x5min" frm_lmask="ISRIC-WISE" to_hgrid="1x1_brazil" to_lmask="nomask"
>lnd/clm2/mappingdata/maps/1x1_brazil/map_5x5min_ISRIC-WISE_to_1x1_brazil_nomask_aave_da_c120717.nc</map> >lnd/clm2/mappingdata/maps/1x1_brazil/map_5x5min_ISRIC-WISE_to_1x1_brazil_nomask_aave_da_c120717.nc</map>
<map frm_hgrid="5x5min" frm_lmask="nomask" to_hgrid="1x1_brazil" to_lmask="nomask" <map frm_hgrid="5x5min" frm_lmask="nomask" to_hgrid="1x1_brazil" to_lmask="nomask"
>lnd/clm2/mappingdata/maps/1x1_brazil/map_5x5min_nomask_to_1x1_brazil_nomask_aave_da_c120717.nc</map> >lnd/clm2/mappingdata/maps/1x1_brazil/map_5x5min_nomask_to_1x1_brazil_nomask_aave_da_c120717.nc</map>
<map frm_hgrid="3x3min" frm_lmask="GLOBE-Gardner" to_hgrid="1x1_brazil" to_lmask="nomask" <map frm_hgrid="3x3min" frm_lmask="GLOBE-Gardner" to_hgrid="1x1_brazil" to_lmask="nomask"
>lnd/clm2/mappingdata/maps/1x1_brazil/map_3x3min_GLOBE-Gardner_to_1x1_brazil_nomask_aave_da_c120927.nc</map> >lnd/clm2/mappingdata/maps/1x1_brazil/map_3x3min_GLOBE-Gardner_to_1x1_brazil_nomask_aave_da_c120927.nc</map>
<map frm_hgrid="3x3min" frm_lmask="GLOBE-Gardner-mergeGIS" to_hgrid="1x1_brazil" to_lmask="nomask" <map frm_hgrid="3x3min" frm_lmask="GLOBE-Gardner-mergeGIS" to_hgrid="1x1_brazil" to_lmask="nomask"
>lnd/clm2/mappingdata/maps/1x1_brazil/map_3x3min_GLOBE-Gardner-mergeGIS_to_1x1_brazil_nomask_aave_da_c120927.nc</map> >lnd/clm2/mappingdata/maps/1x1_brazil/map_3x3min_GLOBE-Gardner-mergeGIS_to_1x1_brazil_nomask_aave_da_c120927.nc</map>
<map frm_hgrid="0.9x1.25" frm_lmask="GRDC" to_hgrid="1x1_brazil" to_lmask="nomask" <map frm_hgrid="0.9x1.25" frm_lmask="GRDC" to_hgrid="1x1_brazil" to_lmask="nomask"
>lnd/clm2/mappingdata/maps/1x1_brazil/map_0.9x1.25_GRDC_to_1x1_brazil_nomask_aave_da_c130309.nc</map> >lnd/clm2/mappingdata/maps/1x1_brazil/map_0.9x1.25_GRDC_to_1x1_brazil_nomask_aave_da_c130309.nc</map>
<map frm_hgrid="360x720cru" frm_lmask="cruncep" to_hgrid="1x1_brazil" to_lmask="nomask" <map frm_hgrid="360x720cru" frm_lmask="cruncep" to_hgrid="1x1_brazil" to_lmask="nomask"
>lnd/clm2/mappingdata/maps/1x1_brazil/map_360x720_cruncep_to_1x1_brazil_nomask_aave_da_c130326.nc</map> >lnd/clm2/mappingdata/maps/1x1_brazil/map_360x720_cruncep_to_1x1_brazil_nomask_aave_da_c130326.nc</map>
<map frm_hgrid="1km-merge-10min" frm_lmask="HYDRO1K-merge-nomask" to_hgrid="1x1_brazil" to_lmask="nomask" <map frm_hgrid="1km-merge-10min" frm_lmask="HYDRO1K-merge-nomask" to_hgrid="1x1_brazil" to_lmask="nomask"
>lnd/clm2/mappingdata/maps/1x1_brazil/map_1km-merge-10min_HYDRO1K-merge-nomask_to_1x1_brazil_nomask_aave_da_c130403.nc</map>
5.2 Compile surface dataset source code (Updated on 15-Nov-2016 based on Ritvik Sahajpal's comment)
Code Blockmodule load cray-netcdf/4.4.0
module load cray-hdf5/1.8.16
export LIB_NETCDF=/opt/cray/netcdf/4.4.0/intel/150/lib
export INC_NETCDF=/opt/cray/netcdf/4.4.0/intel/150/include
export USER_FC=ifort
export USER_CC=icc
export USER_LDFLAGS="-L/opt/cray/netcdf/4.4.0/intel/150/lib -lnetcdf -lnetcdff -lnetcdf_intel"
export USER_LDFLAGS=$USER_LDFLAGS" -L//opt/cray/hdf5/1.8.16/intel/150/lib -lhdf5 -lhdf5_fortran -lhdf5_cpp -lhdf5_fortran_intel -lhdf5_hl_intel -lhdf5hl_fortran_intel"
cd ${ACME_DIR}/models/lnd/clm/tools/clm4_5/mksurfdata_map/src
gmake
5.
2 3 Run the
mksurfdata .pl script in "debug" mode to generate the namelist
Code Blockcd ${ACME_DIR}/models/lnd/clm/tools/clm4_5/mksurfdata_map
./mksurfdata.pl -res usrspec -usr_gname ne120np4 -usr_gdate 150214 -y 1850 -d \
-dinlc /project/projectdirs/ccsm1/inputdata \
-usr_mapdir {CSMDATA}/lnd/clm2/mappingdata/maps/ne120np4
5.3 4 Create the surface dataset via interactive or batch job ...