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aprun -n 48 /project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen --ignore_unmapped -s /project/projectdirs/ccsm1/inputdata/lnd/clm2/mappingdata/grids/SCRIPgrid_0.5x0.5_MODIS_c110228.nc -d /scratch2/scratchdirs/gbisht/inputdata/lnd/clm2/mappingdata/grids//SCRIPgrid_ne120np4_nomask_c101123.nc -m conserve -w map_0.5x0.5_MODIS_to_ne120np4_nomask_aave_da_${CDATE}.nc --src_type SCRIP --dst_type SCRIP
ncatted -a history,global,a,c,/project/projectdirs/ccsm1/esmf/edison/ESMF-6.3.0rp1intel14.0_netcdf4.1.3-O/bin/ESMF_RegridWeightGen map_0.5x0.5_MODIS_to_ne120np4_nomask_aave_da_${CDATE}.nc
ncatted -a hostname,global,a,c,${HOST} -h map_0.5x0.5_MODIS_to_ne120np4_nomask_aave_da_${CDATE}.nc
ncatted -a logname,global,a,c,gbisht -h map_0.5x0.5_MODIS_to_ne120np4_nomask_aave_da_${CDATE}.nc
rm -f rmdups_map_0.5x0.5_MODIS_to_ne120np4_nomask_aave_da_${CDATE}.nc
env MAPFILE=map_0.5x0.5_MODIS_to_ne120np4_nomask_aave_da_${CDATE}.nc NEWMAPFILE=rmdups_map_0.5x0.5_MODIS_to_ne120np4_nomask_aave_da_${CDATE}.nc ncl ./rmdups.ncl

 


4.3.3
>cat 3x3min_LandScan2004.pbs 

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5.1 Compile surface dataset source code (Updated on 15-Nov-2016 based on Ritvik Sahajpal's comment)
module load cray-netcdf/4.34.20
module load cray-hdf5/1.8.1316
export LIB_NETCDF=/opt/cray/netcdf/4.34.0/intel/130150/lib
export INC_NETCDF=/opt/cray/netcdf/4.34.0/intel/130150/include
export USER_FC=ifort
export USER_CC=icc
export USER_LDFLAGS="-L/opt/cray/netcdf/4.34.0/intel/130150/lib -lnetcdf -lnetcdff -lnetcdf_intel"
export USER_LDFLAGS=$USER_LDFLAGS" -L//opt/cray/hdf5/1.8.1316/intel/140150/lib -lhdf5 -lhdf5_fortran -lhdf5_cpp -lhdf5_fortran_intel -lhdf5_hl_intel -lhdf5hl_fortran_intel"
cd ${ACME_DIR}/models/lnd/clm/tools/clm4_5/mksurfdata_map/src
gmake
 

5.2 Run the mksurfdata.pl script in "debug" mode to generate the namelist

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aprun -n 1 ./mksurfdata_map < namelist

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